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Events
JGI - Why Sequence Sweet Orange?
http://www.jgi.doe.gov/sequencing/why/3128.html
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To obtain JGI sweet orange genomic sequences corresponding to a citrus ESTs:
1) Do a BLAST search at the server : http://harvest-blast.org/
In the Database box at the top of the page, select "JGI Citrus".
This will return the BLAST hits
2) To fetch the actual sequences, go to http://harvest-web.org/utilmenu.wc?job=JGI_Citmenu
This allows you to enter a text file of sequence ids and retrieve the sequences.
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Coming soon, a multi-hundred locus gene-specific map of C. sinensis, with synteny to Arabidopsis and Poplar.
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Current
Citrus EST entries in GenBank dbEST
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| Citrus sinensis | 208,909
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| Citrus clementina | 118,365
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| Poncirus trifoliata | 62,344
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| Citrus reticulata | 55,980
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| Citrus unshiu | 19,066
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| Citrus aurantium | 14,584
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| Citrus x limonia | 11,045
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| Citrus latifolia | 8,756
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| Citrus aurantiifolia | 8,219
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| Citrus limettioides | 8,188
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| Citrus x paradisi | 8,039
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| Citrus x paradisi x Poncirus trifoliata | 7,954
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| Citrus reticulata x Citrus temple | 5,823
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| Citrus reshni | 5,768
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| Citrus sunki | 5,216
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| Citrus macrophylla | 1,929
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| Citrus sinensis x Poncirus trifoliata | 1,837
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| Citrus clementina x Citrus tangerina | 1,834
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| Citrus limon | 1,505
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| Citrus medica | 1,115
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| Citrus jambhiri | 989
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| Citrus nobilis x Citrus kinokuni | 645
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| Citrus tamurana | 358
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| Citrus natsudaidai | 202
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| Citrus hassaku | 154
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| Citrus clementina x Citrus reticulata | 74
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558,898
| | - Matthew Lyon - UCR Wed Oct 7 04:04:01 PDT 2009
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