The Dali Database

Dali Fold Classification

LAST UPDATE: March 2005

The Dali database is based on exhaustive all-against-all 3D structure comparison of protein structures currently in the Protein Data Bank (PDB). The classification and alignments are automatically maintained and regularly updated using the Dali search engine.

Fold Classification

FOLD INDEX: the complete list of structural domains in PDB90 ordered by similarity. From here, you can browse the list of structural neighbours and alignments for each representative.

FOLD TREE: a tree of the structural domains in PDB90 in postscript format.

Search for PDB Identifier or Protein

Enter PDB identifier, protein name or keyword:

PLEASE NOTE: PDB structures released after the last Dali DB update will not be in the database! If you wish to find structural neighbours of such a protein, you are advised to submit the structure to the Dali Server at the EBI instead.

Resources

DALI DOWNLOADS: for sequence files, mysql dumpfiles, and the DaliLite standalone application.

DALI HELP: using the Dali Database, explanation of terms, all references.

Reference

Holm L & Sander C (1996). Mapping the protein universe. Science 273:595-603.

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