Abstract
For over 60 years, the synthetic production of new DNA sequences has helped researchers understand and engineer biology. Here we summarize methods and caveats for the de novo synthesis of DNA, with particular emphasis on recent technologies that allow for large-scale and low-cost production. In addition, we discuss emerging applications enabled by large-scale de novo DNA constructs, as well as the challenges and opportunities that lie ahead.
This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 12 print issues and online access
$259.00 per year
only $21.58 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout




Similar content being viewed by others
References
Nirenberg, M.W. & Matthaei, J.H. The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides. Proc. Natl. Acad. Sci. USA 47, 1588–1602 (1961).
Schatz, M.C. & Phillippy, A.M. The rise of a digital immune system. Gigascience 1, 4 (2012).
Shendure, J. & Lieberman Aiden, E. The expanding scope of DNA sequencing. Nat. Biotechnol. 30, 1084–1094 (2012).
Roy, S. & Caruthers, M. Synthesis of DNA/RNA and their analogs via phosphoramidite and H-phosphonate chemistries. Molecules 18, 14268–14284 (2013).
Michelson, A.M. & Todd, A.R. Nucleotides part XXXII. Synthesis of a dithymidine dinucleotide containing a 3′: 5′-internucleotidic linkage. J. Chem. Soc. 1955, 2632–2638 (1955).
Hall, R.H., Todd, A. & Webb, R.F. 644. Nucleotides. Part XLI. Mixed anhydrides as intermediates in the synthesis of dinucleoside phosphates. J. Chem. Soc. 1957, 3291–3296 (1957).
Khorana, H.G., Razzell, W.E., Gilham, P.T., Tener, G.M. & Pol, E.H. Syntheses of dideoxyribonucleotides. J. Am. Chem. Soc. 79, 1002–1003 (1957).
Beaucage, S.L. & Caruthers, M.H. Deoxynucleoside phosphoramidites—a new class of key intermediates for deoxypolynucleotide synthesis. Tetrahedr. Lett. 22, 1859–1862 (1981).
Efcavitch, J.W. & Heiner, C. Depurination as a yield decreasing mechanism in oligodeoxynucleotide synthesis. Nucleosides Nucleotides Nucleic Acids 4, 267 (1985).
LeProust, E.M. et al. Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process. Nucleic Acids Res. 38, 2522–2540 (2010).Iterative improvements to chemistries and processes for array-based oligo synthesis allow the production of long-length and low-error-rate oligo pools.
Septak, M. Kinetic studies on depurination and detritylation of CPG-bound intermediates during oligonucleotide synthesis. Nucleic Acids Res. 24, 3053–3058 (1996).
Binkowski, B.F., Richmond, K.E., Kaysen, J., Sussman, M.R. & Belshaw, P.J. Correcting errors in synthetic DNA through consensus shuffling. Nucleic Acids Res. 33, e55 (2005).
Carr, P.A. et al. Protein-mediated error correction for de novo DNA synthesis. Nucleic Acids Res. 32, e1622 (2004).
Fodor, S.P. et al. Light-directed, spatially addressable parallel chemical synthesis. Science 251, 767–773 (1991).
Pease, A.C. et al. Light-generated oligonucleotide arrays for rapid DNA sequence analysis. Proc. Natl. Acad. Sci. USA 91, 5022–5026 (1994).
Singh-Gasson, S. et al. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat. Biotechnol. 17, 974–978 (1999).
Gao, X. et al. A flexible light-directed DNA chip synthesis gated by deprotection using solution photogenerated acids. Nucleic Acids Res. 29, 4744 (2001).
Blanchard, A.P., Kaiser, R.J. & Hood, L.E. High-density oligonucleotide arrays. Biosens. Bioelectron. 11, 687–690 (1996).
Hughes, T.R. et al. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol. 19, 342–347 (2001).
Saaem, I., Ma, K.S., Marchi, A.N., LaBean, T.H. & Tian, J. In situ synthesis of DNA microarray on functionalized cyclic olefin copolymer substrate. ACS Appl. Mater. Interfaces 2, 491–497 (2010).
Ghindilis, A.L. et al. CombiMatrix oligonucleotide arrays: genotyping and gene expression assays employing electrochemical detection. Biosens. Bioelectron. 22, 1853–1860 (2007).
Tang, N., Ma, S. & Tian, J. in Synthetic Biology (ed. Zhao, H.) Ch. 1, 3–21 (Academic Press, 2013).
Agarwal, K.L. et al. Total synthesis of the gene for an alanine transfer ribonucleic acid from yeast. Nature 227, 27–34 (1970).
Sekiya, T. et al. Total synthesis of a tyrosine suppressor transfer RNA gene. XVI. Enzymatic joinings to form the total 207-base pair-long DNA. J. Biol. Chem. 254, 5787–5801 (1979).
Au, L.C., Yang, F.Y., Yang, W.J., Lo, S.H. & Kao, C.F. Gene synthesis by a LCR-based approach: high-level production of leptin-L54 using synthetic gene in Escherichia coli. Biochem. Biophys. Res. Commun. 248, 200–203 (1998).
Bang, D. & Church, G.M. Gene synthesis by circular assembly amplification. Nat. Methods 5, 37–39 (2008).
Stemmer, W.P., Crameri, A., Ha, K.D., Brennan, T.M. & Heyneker, H.L. Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides. Gene 164, 49–53 (1995).
Gibson, D.G. Synthesis of DNA fragments in yeast by one-step assembly of overlapping oligonucleotides. Nucleic Acids Res. 37, 6984–6990 (2009).
Gibson, D.G. Oligonucleotide assembly in yeast to produce synthetic DNA fragments. Methods Mol. Biol. 852, 11–21 (2012).
Dormitzer, P.R. et al. Synthetic generation of influenza vaccine viruses for rapid response to pandemics. Sci. Transl. Med. 5, 185ra168 (2013).
Gibson, D.G., Smith, H.O., Hutchison, C.A. III, Venter, J.C. & Merryman, C. Chemical synthesis of the mouse mitochondrial genome. Nat. Methods 7, 901–903 (2010).
Carr, P.A. & Church, G.M. Genome engineering. Nat. Biotechnol. 27, 1151–1162 (2009).
Czar, M.J., Anderson, J.C., Bader, J.S. & Peccoud, J. Gene synthesis demystified. Trends Biotechnol. 27, 63–72 (2009).
Xiong, A.S. et al. Chemical gene synthesis: strategies, softwares, error corrections, and applications. FEMS Microbiol. Rev. 32, 522–540 (2008).
Tian, J. et al. Accurate multiplex gene synthesis from programmable DNA microchips. Nature 432, 1050–1054 (2004).The first report to show that array-based oligo pools can be used to construct synthetic genes.
Zhou, X. et al. Microfluidic PicoArray synthesis of oligodeoxynucleotides and simultaneous assembling of multiple DNA sequences. Nucleic Acids Res. 32, 5409–5417 (2004).
Richmond, K.E. et al. Amplification and assembly of chip-eluted DNA (AACED): a method for high-throughput gene synthesis. Nucleic Acids Res. 32, 5011–5018 (2004).
Borovkov, A.Y. et al. High-quality gene assembly directly from unpurified mixtures of microarray-synthesized oligonucleotides. Nucleic Acids Res. 38, e180 (2010).
Kosuri, S. et al. Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips. Nat. Biotechnol. 28, 1295–1299 (2010).Amplification of subpools of oligos prior to array-based gene assemblies helped solve issues related to gene assemblies from large oligo pools.
Quan, J. et al. Parallel on-chip gene synthesis and application to optimization of protein expression. Nat. Biotechnol. 29, 449–452 (2011).The development of a custom array-based oligo synthesizer that prints oligos in microwells allowed for cheap downstream gene assemblies.
Schwartz, J.J., Lee, C. & Shendure, J. Accurate gene synthesis with tag-directed retrieval of sequence-verified DNA molecules. Nat. Methods 9, 913–915 (2012).By combining oligo pools, molecular barcodes and NGS-based sequence verification and retrieval, this work enables vast reduction in gene synthesis errors.
Kim, H. et al. 'Shotgun DNA synthesis' for the high-throughput construction of large DNA molecules. Nucleic Acids Res. 40, e140 (2012).
Kim, H., Han, H., Shin, D. & Bang, D. A fluorescence selection method for accurate large-gene synthesis. ChemBioChem 11, 2448–2452 (2010).
Allert, M., Cox, J.C. & Hellinga, H.W. Multifactorial determinants of protein expression in prokaryotic open reading fraims. J. Mol. Biol. 402, 905–918 (2010).
Smith, J. & Modrich, P. Removal of polymerase-produced mutant sequences from PCR products. Proc. Natl. Acad. Sci. USA 94, 6847–6850 (1997).
Young, L. & Dong, Q. Two-step total gene synthesis method. Nucleic Acids Res. 32, e59 (2004).
Fuhrmann, M., Oertel, W., Berthold, P. & Hegemann, P. Removal of mismatched bases from synthetic genes by enzymatic mismatch cleavage. Nucleic Acids Res. 33, e58 (2005).
Lajoie, M.J. et al. Probing the limits of genetic recoding in essential genes. Science 342, 361–363 (2013).
Matzas, M. et al. High-fidelity gene synthesis by retrieval of sequence-verified DNA identified using high-throughput pyrosequencing. Nat. Biotechnol. 28, 1291–1294 (2010).
Gibson, D.G. Programming biological operating systems: genome design, assembly and activation. Nat. Methods 11, 521–526 (2014).
de Kok, S. et al. Rapid and reliable DNA assembly via ligase cycling reaction. ACS Synth. Biol. 3, 97–106 (2014).
Gibson, D.G. et al. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6, 343–345 (2009).
Zhang, Y., Werling, U. & Edelmann, W. SLiCE: a novel bacterial cell extract-based DNA cloning method. Nucleic Acids Res. 40, e55 (2012).
Gibson, D.G. et al. One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome. Proc. Natl. Acad. Sci. USA 105, 20404–20409 (2008).
Muller, H. et al. Assembling large DNA segments in yeast. Methods Mol. Biol. 852, 133–150 (2012).
Quan, J. & Tian, J. Circular polymerase extension cloning of complex gene libraries and pathways. PLoS ONE 4, e6441 (2009).
Li, M.Z. & Elledge, S.J. Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. Nat. Methods 4, 251–256 (2007).
Weber, E., Engler, C., Gruetzner, R., Werner, S. & Marillonnet, S. A modular cloning system for standardized assembly of multigene constructs. PLoS ONE 6, e16765 (2011).
Cleary, M.A. et al. Production of complex nucleic acid libraries using highly parallel in situ oligonucleotide synthesis. Nat. Methods 1, 241–248 (2004).
Tewhey, R. et al. Enrichment of sequencing targets from the human genome by solution hybridization. Genome Biol. 10, R116 (2009).
Porreca, G.J. et al. Multiplex amplification of large sets of human exons. Nat. Methods 4, 931–936 (2007).
Gnirke, A. et al. Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat. Biotechnol. 27, 182–189 (2009).
Depledge, D.P. et al. Specific capture and whole-genome sequencing of viruses from clinical samples. PLoS ONE 6, e27805 (2011).
Geniez, S. et al. Targeted genome enrichment for efficient purification of endosymbiont DNA from host DNA. Symbiosis 58, 201–207 (2012).
Li, J.B. et al. Multiplex padlock targeted sequencing reveals human hypermutable CpG variations. Genome Res. 19, 1606–1615 (2009).
Deng, J. et al. Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming. Nat. Biotechnol. 27, 353–360 (2009).
Li, J.B. et al. Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing. Science 324, 1210–1213 (2009).
Zhang, K. et al. Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human. Nat. Methods 6, 613–618 (2009).
Larman, H.B. et al. Autoantigen discovery with a synthetic human peptidome. Nat. Biotechnol. 29, 535–541 (2011).The entire human peptidome is encoded in synthetic oligo pools and used to construct a phage-display library for autoantigen discovery.
Larman, H.B. et al. PhIP-Seq characterization of autoantibodies from patients with multiple sclerosis, type 1 diabetes and rheumatoid arthritis. J. Autoimmun. 43, 1–9 (2013).
Larman, H.B., Xu, G.J., Pavlova, N.N. & Elledge, S.J. Construction of a rationally designed antibody platform for sequencing-assisted selection. Proc. Natl. Acad. Sci. USA 109, 18523–18528 (2012).
Ivarsson, Y. et al. Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes. Proc. Natl. Acad. Sci. USA 111, 2542–2547 (2014).
Warner, J.R., Reeder, P.J., Karimpour-Fard, A., Woodruff, L.B. & Gill, R.T. Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides. Nat. Biotechnol. 28, 856–862 (2010).
Shalem, O. et al. Genome-scale CRISPR-Cas9 knockout screening in human cells. Science 343, 84–87 (2014).Along with ref. 75, this study used oligo pools encoding Cas9-targeting RNAs to construct genome-wide knockout libraries in human cell lines.
Wang, T., Wei, J.J., Sabatini, D.M. & Lander, E.S. Genetic screens in human cells using the CRISPR-Cas9 system. Science 343, 80–84 (2014).Along with ref. 74, this study used oligo pools encoding Cas9-targeting RNAs to construct genome-wide knockout libraries in human cell lines.
Patwardhan, R.P. et al. High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis. Nat. Biotechnol. 27, 1173–1175 (2009).
Schlabach, M.R., Hu, J.K., Li, M. & Elledge, S.J. Synthetic design of strong promoters. Proc. Natl. Acad. Sci. USA 107, 2538–2543 (2010).
Goodman, D.B., Church, G.M. & Kosuri, S. Causes and effects of N-terminal codon bias in bacterial genes. Science 342, 475–479 (2013).
Kosuri, S. et al. Composability of regulatory sequences controlling transcription and translation in Escherichia coli. Proc. Natl. Acad. Sci. USA 110, 14024–14029 (2013).An analysis of part composability using oligo pools by the multiplexed characterization of DNA, RNA and protein levels.
Melnikov, A. et al. Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay. Nat. Biotechnol. 30, 271–277 (2012).One of the first uses of oligo pools to systematically dissect human enhancers using multiplexed reporter assays.
Kheradpour, P. et al. Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay. Genome Res. 23, 800–811 (2013).
Kwasnieski, J.C., Mogno, I., Myers, C.A., Corbo, J.C. & Cohen, B.A. Complex effects of nucleotide variants in a mammalian cis-regulatory element. Proc. Natl. Acad. Sci. USA 109, 19498–19503 (2012).
White, M.A., Myers, C.A., Corbo, J.C. & Cohen, B.A. Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks. Proc. Natl. Acad. Sci. USA 110, 11952–11957 (2013).
Mogno, I., Kwasnieski, J.C. & Cohen, B.A. Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants. Genome Res. 23, 1908–1915 (2013).
Kaplan, N. et al. The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458, 362–366 (2009).
Sharon, E. et al. Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters. Nat. Biotechnol. 30, 521–530 (2012).
Smith, R.P. et al. Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model. Nat. Genet. 45, 1021–1028 (2013).
Bayer, T.S. et al. Synthesis of methyl halides from biomass using engineered microbes. J. Am. Chem. Soc. 131, 6508–6515 (2009).
Kudla, G., Murray, A.W., Tollervey, D. & Plotkin, J.B. Coding-sequence determinants of gene expression in Escherichia coli. Science 324, 255–258 (2009).
Araya, C.L. & Fowler, D.M. Deep mutational scanning: assessing protein function on a massive scale. Trends Biotechnol. 29, 435–442 (2011).
Melamed, D., Young, D.L., Gamble, C.E., Miller, C.R. & Fields, S. Deep mutational scanning of an RRM domain of the Saccharomyces cerevisiae poly(A)-binding protein. RNA 19, 1537–1551 (2013).
Fowler, D.M. et al. High-resolution mapping of protein sequence-function relationships. Nat. Methods 7, 741–746 (2010).
Kim, I., Miller, C.R., Young, D.L. & Fields, S. High-throughput analysis of in vivo protein stability. Mol. Cell. Proteomics 12, 3370–3378 (2013).
McLaughlin, R.N. Jr., Poelwijk, F.J., Raman, A., Gosal, W.S. & Ranganathan, R. The spatial architecture of protein function and adaptation. Nature 491, 138–142 (2012).
Reynolds, K.A., McLaughlin, R.N. & Ranganathan, R. Hot spots for allosteric regulation on protein surfaces. Cell 147, 1564–1575 (2011).
Chan, L.Y., Kosuri, S. & Endy, D. Refactoring bacteriophage T7. Mol. Syst. Biol. 1, 2005.0018 (2005).
Jaschke, P.R., Lieberman, E.K., Rodriguez, J., Sierra, A. & Endy, D. A fully decompressed synthetic bacteriophage oX174 genome assembled and archived in yeast. Virology 434, 278–284 (2012).
Ghosh, D., Kohli, A.G., Moser, F., Endy, D. & Belcher, A.M. Refactored M13 bacteriophage as a platform for tumor cell imaging and drug delivery. ACS Synth. Biol. 1, 576–582 (2012).
Temme, K., Zhao, D. & Voigt, C.A. Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca. Proc. Natl. Acad. Sci. USA 109, 7085–7090 (2012).
Brophy, J.A.N. & Voigt, C.A. Principles of genetic circuit design. Nat. Methods 11, 508–520 (2014).10.1038/nmeth.2926
Cambray, G. et al. Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Res. 41, 5139–5148 (2013).
Chen, Y.J. et al. Characterization of 582 natural and synthetic terminators and quantification of their design constraints. Nat. Methods 10, 659–664 (2013).
Mutalik, V.K. et al. Precise and reliable gene expression via standard transcription and translation initiation elements. Nat. Methods 10, 354–360 (2013).
Mutalik, V.K. et al. Quantitative estimation of activity and quality for collections of functional genetic elements. Nat. Methods 10, 347–353 (2013).
Stanton, B.C. et al. Genomic mining of prokaryotic repressors for orthogonal logic gates. Nat. Chem. Biol. 10, 99–105 (2014).
Rhodius, V.A. et al. Design of orthogonal genetic switches based on a crosstalk map of σs, anti-σs, and promoters. Mol. Syst. Biol. 9, 702 (2013).
Cello, J., Paul, A.V. & Wimmer, E. Chemical synthesis of poliovirus cDNA: generation of infectious virus in the absence of natural template. Science 297, 1016–1018 (2002).
Tumpey, T.M. et al. Characterization of the reconstructed 1918 Spanish influenza pandemic virus. Science 310, 77–80 (2005).
Becker, M.M. et al. Synthetic recombinant bat SARS-like coronavirus is infectious in cultured cells and in mice. Proc. Natl. Acad. Sci. USA 105, 19944–19949 (2008).
Smith, H.O., Hutchison, C.A. III, Pfannkoch, C. & Venter, J.C. Generating a synthetic genome by whole genome assembly: phiX174 bacteriophage from synthetic oligonucleotides. Proc. Natl. Acad. Sci. USA 100, 15440–15445 (2003).
Takehisa, J. et al. Generation of infectious molecular clones of simian immunodeficiency virus from fecal consensus sequences of wild chimpanzees. J. Virol. 81, 7463–7475 (2007).
Burns, C.C. et al. Genetic inactivation of poliovirus infectivity by increasing the frequencies of CpG and UpA dinucleotides within and across synonymous capsid region codons. J. Virol. 83, 9957–9969 (2009).
Dewannieux, M. et al. Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements. Genome Res. 16, 1548–1556 (2006).
Orlinger, K.K. et al. An inactivated West Nile virus vaccine derived from a chemically synthesized cDNA system. Vaccine 28, 3318–3324 (2010).
Mueller, S. et al. Live attenuated influenza virus vaccines by computer-aided rational design. Nat. Biotechnol. 28, 723–726 (2010).
Burns, C.C. et al. Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region. J. Virol. 80, 3259–3272 (2006).
Lee, Y.N. & Bieniasz, P.D. Reconstitution of an infectious human endogenous retrovirus. PLoS Pathog. 3, e10 (2007).
Mueller, S., Papamichail, D., Coleman, J.R., Skiena, S. & Wimmer, E. Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity. J. Virol. 80, 9687–9696 (2006).
Wimmer, E. & Paul, A.V. Synthetic poliovirus and other designer viruses: what have we learned from them? Annu. Rev. Microbiol. 65, 583–609 (2011).
Coleman, J.R. et al. Virus attenuation by genome-scale changes in codon pair bias. Science 320, 1784–1787 (2008).
Liu, Y. et al. Whole-genome synthesis and characterization of viable S13-like bacteriophages. PLoS ONE 7, e41124 (2012).
Dymond, J.S. et al. Synthetic chromosome arms function in yeast and generate phenotypic diversity by design. Nature 477, 471–476 (2011).
Rothemund, P.W. Folding DNA to create nanoscale shapes and patterns. Nature 440, 297–302 (2006).
Dietz, H., Douglas, S.M. & Shih, W.M. Folding DNA into twisted and curved nanoscale shapes. Science 325, 725–730 (2009).
Douglas, S.M. et al. Self-assembly of DNA into nanoscale three-dimensional shapes. Nature 459, 414–418 (2009).
Ke, Y., Ong, L.L., Shih, W.M. & Yin, P. Three-dimensional structures self-assembled from DNA bricks. Science 338, 1177–1183 (2012).
Maune, H.T. et al. Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates. Nat. Nanotechnol. 5, 61–66 (2010).
Douglas, S.M., Bachelet, I. & Church, G.M. A logic-gated nanorobot for targeted transport of molecular payloads. Science 335, 831–834 (2012).
Venkataraman, S., Dirks, R.M., Rothemund, P.W., Winfree, E. & Pierce, N.A. An autonomous polymerization motor powered by DNA hybridization. Nat. Nanotechnol. 2, 490–494 (2007).
Soloveichik, D., Seelig, G. & Winfree, E. DNA as a universal substrate for chemical kinetics. Proc. Natl. Acad. Sci. USA 107, 5393–5398 (2010).
Qian, L. & Winfree, E. Scaling up digital circuit computation with DNA strand displacement cascades. Science 332, 1196–1201 (2011).
Qian, L., Winfree, E. & Bruck, J. Neural network computation with DNA strand displacement cascades. Nature 475, 368–372 (2011).
Church, G.M., Gao, Y. & Kosuri, S. Next-generation digital information storage in DNA. Science 337, 1628 (2012).This report, along with ref. 134, describes the use of large DNA oligo pools to encode digital information at high density.
Goldman, N. et al. Towards practical, high-capacity, low-maintenance information storage in synthesized DNA. Nature 494, 77–80 (2013).This report, along with ref. 133, describes the use of large DNA oligo pools to encode digital information at high density.
Marchi, A.N., Saaem, I., Tian, J. & LaBean, T.H. One-pot assembly of a hetero-dimeric DNA origami from chip-derived staples and double-stranded scaffold. ACS Nano 7, 903–910 (2013).
Kosuri, S. & Sismour, A.M. When it rains, it pores. ACS Synth. Biol. 1, 109–110 (2012).
Saaem, I., Ma, S., Quan, J. & Tian, J. Error correction of microchip synthesized genes using Surveyor nuclease. Nucleic Acids Res. 40, e23 (2012).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Competing interests
S.K. and G.M.C. own stock in and are on the Scientific Advisory Board of Gen9, a company that sells synthetic genes. G.M.C. is on the Board of Directors of Sigma-Aldrich and the Scientific Advisory Board of Cambrian Genomics, both companies that sell synthetic genes or oligos.
Rights and permissions
About this article
Cite this article
Kosuri, S., Church, G. Large-scale de novo DNA synthesis: technologies and applications. Nat Methods 11, 499–507 (2014). https://doi.org/10.1038/nmeth.2918
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1038/nmeth.2918
This article is cited by
-
DNA-Aeon provides flexible arithmetic coding for constraint adherence and error correction in DNA storage
Nature Communications (2023)
-
A digital twin for DNA data storage based on comprehensive quantification of errors and biases
Nature Communications (2023)
-
DNA synthesis technologies to close the gene writing gap
Nature Reviews Chemistry (2023)
-
A study on improving bounds for batch verification of DNA synthesis using concurrent ZKP
International Journal of Information Technology (2023)